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Stats Book
Online Statistics Book
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Authors
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Authors
Dedication
Introduction
Conventions
Abbreviations
Citation
Software
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Installation
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RJAH statistics course
Jupyter Notebook
Packages
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Transferring Packages to New R Installation (Mac OSX)
JGR on Mac OSX from R 3.4
Data Sets
Functions
Data and Graphics
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Data into R
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Enter Manually
Copy and Paste
Import Spreadsheet
Open RDA Files
Importing Data from SPSS
Data out of R
Graphics
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Plot builder
Export Plots to MS PowerPoint and Word
Citating R, JGR and Packages
Help
Data and Plots
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Data Types
Descriptive Statistics
Distribution of Data
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Normal Distribution
Other Distributions
Confidence Intervals
Fonts, Themes and Colours
Grammar of Graphics
Plots
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Bar Chart
Pie Chart
Strip Plot
Swarm Plot
Box Plot
Violin Plot
Histogram
Scatter Plot
Line Plot
Sunflower Plot
Bag Plot
Regression Plot
Bland-Altman Plot
Funnel Plot
Forest Plot
Radar Plot
Mosaic Plot
ROC Plot
Survival Plot
Time Series
Correlation Plot
Hierarchical Edge Bundling Plot
Circos Plots
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Circos Plots – RCircos
Circos Plots – circlize
Circos Plots – BioCircos
Decision Tree Plot
Exploratory Plot
Interactive Plot
Epidemiology
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Screening
Prevalence & Incidence
Risks and Odds Ratio
Risk Example
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Exposure No Effect on Incidence
Exposure Increases Incidence
Exposure Decreases Incidence
Probability
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Probability and Chance
Growth Curves
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Percentiles and Quantiles
Z and T scores
Statistical Tests
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Hypothesis
P value
Tests for Normality
Parametric Tests
Non Parametric Tests
Which Statistical Test?
Power Analysis
Transformation of Data
Sensitivity / Specificity
Errors
Repeatability and Reproducibility
Bias and Accuracy
Multiple Observers
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Interclass Correlation Coefficient
Kappa Test
Curve Fitting
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Regression Coefficient
Correlation Coefficient
Interpolation
Other Models
Linear Transformation
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Principle Component Analysis
Linear Discriminant Analysis
One-Hot Encoding of Categorical Variables
Studies and Trials
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Observational Studies
Randomised Controlled Trial
Meta-Analysis
Hierarchy of Evidence
Survival Analysis
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Life Table Survival Analysis
Kaplan-Meier Survival Analysis
Survival Analysis in R / JGR
Cox Proportional Hazards
DNA Analysis
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Lady’s Slipper Orchid
IDH2 gene
Genomics – Circos Plot
Selected Papers
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P values & Confidence Intervals, Their Use and Abuse
Friday 13th
Easter
Equation of Time
Bird Migration
Phylogenetic Tree
Advanced Concepts
Questions & Answers
References
Questions Probability
Questions Epidemiology
Questions Statistical Tests
Meta-Analysis
Funnelplot
and
forest plot
; refer to relevant pages