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Stats Book

Online Statistics Book

  • Authors
    • Authors
    • Dedication
    • Introduction
    • Conventions
    • Abbreviations
    • Citation
  • Software
    • Installation
      • Jupyter Notebook
      • Packages
        • Transferring Packages to New R Installation (Mac OSX)
      • JGR on Mac OSX from R 3.4
    • Data Sets
    • Functions
    • Data and Graphics
      • Data into R
        • Enter Manually
        • Copy and Paste
        • Import Spreadsheet
        • Open RDA Files
        • Importing Data from SPSS
      • Data out of R
      • Graphics
        • Plot builder
        • Export Plots to MS PowerPoint and Word
    • Citating R, JGR and Packages
    • Help
  • Data and Plots
    • Data Types
    • Descriptive Statistics
    • Distribution of Data
      • Normal Distribution
      • Other Distributions
    • Confidence Intervals
    • Fonts, Themes and Colours
    • Grammar of Graphics
    • Plots
      • Bar Chart
      • Pie Chart
      • Strip Plot
      • Swarm Plot
      • Box Plot
      • Violin Plot
      • Histogram
      • Scatter Plot
      • Line Plot
      • Sunflower Plot
      • Bag Plot
      • Regression Plot
      • Bland-Altman Plot
      • Funnel Plot
      • Forest Plot
      • Radar Plot
      • Mosaic Plot
      • ROC Plot
      • Survival Plot
      • Time Series
      • Correlation Plot
      • Hierarchical Edge Bundling Plot
      • Circos Plots
        • Circos Plots – RCircos
        • Circos Plots – circlize
        • Circos Plots – BioCircos
      • Decision Tree Plot
      • Exploratory Plot
      • Interactive Plot
  • Epidemiology
    • Screening
    • Prevalence & Incidence
    • Risks and Odds Ratio
    • Risk Example
      • Exposure No Effect on Incidence
      • Exposure Increases Incidence
      • Exposure Decreases Incidence
  • Probability
    • Probability and Chance
  • Growth Curves
    • Percentiles and Quantiles
    • Z and T scores
  • Statistical Tests
    • Hypothesis
    • P value
    • Tests for Normality
    • Parametric Tests
    • Non Parametric Tests
    • Which Statistical Test?
    • Power Analysis
    • Transformation of Data
    • Sensitivity / Specificity
    • Errors
    • Repeatability and Reproducibility
    • Bias and Accuracy
    • Multiple Observers
      • Interclass Correlation Coefficient
      • Kappa Test
  • Curve Fitting
    • Regression Coefficient
    • Correlation Coefficient
    • Interpolation
    • Other Models
  • Linear Transformation
    • Principle Component Analysis
    • Linear Discriminant Analysis
    • One-Hot Encoding of Categorical Variables
  • Studies and Trials
    • Observational Studies
    • Randomised Controlled Trial
    • Meta-Analysis
    • Hierarchy of Evidence
  • Survival Analysis
    • Life Table Survival Analysis
    • Kaplan-Meier Survival Analysis
    • Survival Analysis in R / JGR
    • Cox Proportional Hazards
  • DNA Analysis
    • Lady’s Slipper Orchid
    • IDH2 gene
    • Genomics – Circos Plot
  • Selected Papers
    • P values & Confidence Intervals, Their Use and Abuse
    • Friday 13th
    • Easter
    • Equation of Time
    • Bird Migration
  • Advanced Concepts
  • Questions & Answers
  • References
  • Questions Probability
  • Questions Epidemiology
  • Questions Statistical Tests

Authors

Professor Paul Cool
Mr Matt Ockendon

Citation

Cool P, Ockendon M. Stats Book. http://countcool.com (date of access)

ISBN

978-0-9560215-7-1

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